TAP SET in Eragrostis tef

Full lineage¹: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Protein source: Tef Improvement Project


The colour code corresponds to the rules for the domains:

should be contained
should not be contained

Domain rules

SET
PHD
zf-C2H2
TCR
Myb_DNA-binding
CXC

(Domain names are clickable)



List of proteins (80)

[Click here to show 6 isoforms]

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nameClick button to show/hide sequence: Download sequence?
augustus_masked-scaffold13825-abinit-gene-0.0-mRNA-1
augustus_masked-scaffold1754-abinit-gene-0.1-mRNA-1
augustus_masked-scaffold1942-abinit-gene-2.4-mRNA-1
augustus_masked-scaffold2167-abinit-gene-0.6-mRNA-1
augustus_masked-scaffold362-abinit-gene-1.9-mRNA-1
augustus_masked-scaffold698-abinit-gene-0.14-mRNA-1
augustus_masked-scaffold7345-abinit-gene-0.5-mRNA-1
maker-scaffold12370-augustus-gene-0.20-mRNA-1
maker-scaffold13303-snap-gene-0.7-mRNA-1
maker-scaffold14218-snap-gene-0.5-mRNA-1
maker-scaffold1433-augustus-gene-1.44-mRNA-1
maker-scaffold1438-augustus-gene-1.27-mRNA-1
maker-scaffold1579-augustus-gene-0.33-mRNA-1
maker-scaffold15874-snap-gene-0.17-mRNA-2
maker-scaffold1604-snap-gene-0.26-mRNA-1
maker-scaffold17-snap-gene-1.48-mRNA-1
maker-scaffold17-snap-gene-1.49-mRNA-1
maker-scaffold17-snap-gene-1.50-mRNA-1
maker-scaffold1719-snap-gene-1.36-mRNA-1
maker-scaffold1813-augustus-gene-0.34-mRNA-1
maker-scaffold18243-snap-gene-0.12-mRNA-1
maker-scaffold1826-snap-gene-0.3-mRNA-1
maker-scaffold2037-snap-gene-1.38-mRNA-1
maker-scaffold2087-augustus-gene-0.8-mRNA-1
maker-scaffold2300-snap-gene-1.19-mRNA-1
maker-scaffold2301-augustus-gene-1.54-mRNA-1
maker-scaffold2301-snap-gene-1.59-mRNA-1
maker-scaffold2360-augustus-gene-2.46-mRNA-1
maker-scaffold2457-snap-gene-0.16-mRNA-1
maker-scaffold2585-snap-gene-0.44-mRNA-1
maker-scaffold26-snap-gene-0.25-mRNA-1
maker-scaffold2638-snap-gene-2.34-mRNA-1
maker-scaffold2788-augustus-gene-1.41-mRNA-1
maker-scaffold2816-snap-gene-0.43-mRNA-1
maker-scaffold2906-snap-gene-1.39-mRNA-1
maker-scaffold2986-snap-gene-0.35-mRNA-1
maker-scaffold3054-snap-gene-0.41-mRNA-1
maker-scaffold3054-snap-gene-0.42-mRNA-1
maker-scaffold3353-augustus-gene-0.24-mRNA-1
maker-scaffold3392-snap-gene-0.67-mRNA-1
maker-scaffold3392-snap-gene-0.75-mRNA-1
maker-scaffold3443-snap-gene-0.30-mRNA-1
maker-scaffold375-snap-gene-1.33-mRNA-1
maker-scaffold3955-augustus-gene-0.16-mRNA-1
maker-scaffold404-snap-gene-1.38-mRNA-1
maker-scaffold4489-snap-gene-0.36-mRNA-1
maker-scaffold466-snap-gene-0.39-mRNA-1
maker-scaffold4675-augustus-gene-1.17-mRNA-1
maker-scaffold4849-snap-gene-0.37-mRNA-1
maker-scaffold5089-snap-gene-1.42-mRNA-1
maker-scaffold5374-augustus-gene-0.23-mRNA-1
maker-scaffold5505-snap-gene-0.31-mRNA-1
maker-scaffold568-snap-gene-0.47-mRNA-1
maker-scaffold5826-snap-gene-0.15-mRNA-1
maker-scaffold5830-snap-gene-0.32-mRNA-1
maker-scaffold5975-augustus-gene-0.49-mRNA-1
maker-scaffold6285-snap-gene-0.35-mRNA-1
maker-scaffold6823-snap-gene-0.37-mRNA-1
maker-scaffold698-snap-gene-1.15-mRNA-1
maker-scaffold7009-snap-gene-0.42-mRNA-1
maker-scaffold7034-snap-gene-2.15-mRNA-1
maker-scaffold7796-augustus-gene-0.9-mRNA-1
maker-scaffold781-snap-gene-3.47-mRNA-1
maker-scaffold7968-augustus-gene-1.34-mRNA-1
maker-scaffold816-snap-gene-0.41-mRNA-1
maker-scaffold8236-snap-gene-1.12-mRNA-1
maker-scaffold8652-snap-gene-0.31-mRNA-1
maker-scaffold869-augustus-gene-0.26-mRNA-1
maker-scaffold931-augustus-gene-1.23-mRNA-1
maker-scaffold9685-snap-gene-0.7-mRNA-1
snap_masked-scaffold11630-abinit-gene-0.2-mRNA-1
snap_masked-scaffold1493-abinit-gene-1.13-mRNA-1
snap_masked-scaffold1649-abinit-gene-0.6-mRNA-1
snap_masked-scaffold2274-abinit-gene-1.17-mRNA-1
snap_masked-scaffold3400-abinit-gene-3.22-mRNA-1
snap_masked-scaffold3548-abinit-gene-3.32-mRNA-1
snap_masked-scaffold3774-abinit-gene-2.11-mRNA-1
snap_masked-scaffold4012-abinit-gene-0.40-mRNA-1
snap_masked-scaffold4566-abinit-gene-0.16-mRNA-1
snap_masked-scaffold4685-abinit-gene-0.13-mRNA-1
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A list of species letter codes included in the protein names can be found here (opens in new tab).

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¹ Information recieved using NCBI E-utilities and NCBI taxonomy database.
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